Publications
Please see my publications via my ResearcherID:
2012 |
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| Paper IF:7.836 |
Ragan C, Mowry BJ, Bauer DC, “Hybridization based reconstruction of small non-coding RNA transcripts from deep sequencing data”, NAR, Nucleic Acids Res. 2012 Jun16. PMID: 22705792 |  |
| Paper IF:13.588 |
Buske FA, Bauer DC, Mattick JS, Bailey TL., , “Triplexator: Detecting nucleic acid triple helices in genomic and transcriptomic data.”.Genome Res. 2012 May 1. PMID: 22550012.
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2011 |
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| Paper IF=5.468 |
Bauer, D.C., Willadsen, K., Buske, F.A., Le Cao, K., Bailey, T.L., Dellaire, G., Bodén, M., , “Sorting the nuclear proteome.”, ISMB 2011 (proceedings published in Bioinformatics). Bioinformatics. 2011 Jul 1;27(13):i7-14. PMID:21685104. | |
| (Paper) | Bauer, D.C.. “Variant calling comparison CASAVA1.8 and GATK”. Nature Precedings, 2011
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2010 |
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| Paper IF=5.468 |
Buske, F.A., Bauer, D.C., Bodén, M., Bailey, T.L., “Assigning roles to DNA regulatory motifs using comparative genomics.”, Bioinformatics, 2010 Apr 1;26(7):860-6. PMID: 20147307 | |
| Paper IF=3.428 |
Bauer, D.C., Buske, F.A., Bailey, T.L., “Dual-functioning transcription factors in the developmental gene network of Drosophila melanogaster”, BMC bioinformatics, 2010 Jul 2;11:366. PMID: 20594356 |  |
| Paper | Bauer, D.C., Buske, F.A., Bodén, M., Bailey, T.L., “Predicting SUMOylation sites in developmental transcription factors of Drosophila melanogaster.”, Neurocomputing, Volume 73, Issues 13-15, August 2010, Pages 2300-2307.
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2009 |
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| (Paper) | Bauer, D.C., “Ten Simple Rules for Searching and Organizing the Scientific Literature”, Nature Precedings, Oct. 2009 | |
| Paper IF=5.468 |
Bauer, D.C., Bailey, T.L., “Optimizing static thermodynamic models of transcriptional regulation.”, Bioinformatics, 2009, 25, 1640-1646. PMID:19398449 | |
| Paper | The FANTOM Consortium et al., “The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line.”, Nat Genet. 2009. PMID:19377474.
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2008 |
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| Poster | Bauer, D.C., Bailey, T.L., “STREAM : A Practical Workbench for the Quantitative Modeling of Transcription”. GIW 2008. |  |
| Paper | Bauer, D.C., Bailey, T.L., “STREAM: Static Thermodynamic REgulAtory Model of transcription.”, Bioinformatics 2008 24: 2544-2545. PMID:18776194 | |
| Paper | Bauer, D.C., Fabian A. Buske, Mikael Bodén, “Predicting SUMOylation Sites.”, Lectures Notes in Bioinformatics, Volume 5265/2008, pp 28-40, Springer (PRIB 2008).
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| Paper | Bauer, D.C., Bailey T.L., “Studying the functional conservation of cis-regulatory modules and their transcriptional output.”, BMC Bioinformatics, Apr 29;9(1):220. PMID: 18442418.
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2007 |
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| Poster | Bauer, D.C., Bailey, T.L., “Predicting Cis-Regulatory Modules and their Transcriptional Output.”, Bioinformatics Australia Converence (2007).
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2006 |
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| Paper | Bauer, D.C., Bodén, M., Thier, R. and Gillam, E. M., “STAR: Predicting recombination sites from amino acid sequence.”, BMC Bioinformatics, 2006 Oct 8; 7:437. PMID: 17026775.
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2005 |
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| Thesis | “In-silico characterization of recombination sites: a machine learning approach.”, BSc Hons thesis, University of Queensland, 2005 Supervisors: Dr. Mikael Bodén and Dr. Ricarda Thier.
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| Paper | Bauer, D.C., Bodén, M., Thier, R. and Yuan, Z., “Predicting structural disruption of proteins caused by crossover.”, IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB) 2005.
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2004 |
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| Thesis | “Motif search in sequence data: Comparison of profile and pattern based search algorithm.”, BSc thesis, Freie Universität Berlin, 2004 Supervisors: Prof. Dr. Knut Reinert and Prof. Dr. Martin Vingron.
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