Bio-IT World Asia 2013
I am an invited speaker at the Bio-IT World Asia 2013 conference in the Bioinformatics and Cancer Genomics track, in Singapore May 28-31, 2013.
Read full post...I am an invited speaker at the Bio-IT World Asia 2013 conference in the Bioinformatics and Cancer Genomics track, in Singapore May 28-31, 2013.
Read full post...I have been playing with HTML5 for my new tool for alignment comparisons. To visualize the graphs I’m using flotr2 by HumbleSoftware. Which produces an image like this — on the fly and without any actual graphic files: The first thing you need to include in your page is the library. You can do that [...]
Read full post...NorahDesk non-coding RNA detection from deep sequencing data NorahDesk is a small non-coding RNA (ncRNA) detection tool for RNA sequencing (RNA-Seq) data, developed by my PhD student Chikako Ragan. NorahDesk utilizes the coverage-distribution of small RNA sequence data and thermodynamic assessments of secondary structure to reliably predict and annotate ncRNA classes. For more information [...]
Read full post...Triplexator is a bioinformatics tool (by Fabian Buske) harnessing the power of a so far underutilized mechanism for sequence-specific DNA binding that is of great interest for biotechnological and gene-therapeutic applications. This potent homing mechanism is provided by nucleic acids triple helices, also called triplexes, which are oligonucleotide complexes made of three strands of either [...]
Read full post...This year’s Pattern Recognition in Bioinformatics (PRIB 2008) was organized by the Monash University and was therefore held in Melbourne. It was a very interesting conference with a great sessions and a good organization. On-top of that, our paper even won the best paper award. The slides from my talk are online on slideshare.
Read full post...I have developed a new bioinformatics tool called STREAM – Static Thermodynamic REgulAtory Model of transcription. STREAM is a application for researchers, who want to model the transcriptional regulation of a specific gene and predict its transcriptional output in different situations STREAM is available as java .jar file and java source code upon request. I [...]
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